Introduction
This page contains supporting material for the article "Evolution in a Cellular Protein Space" written by Charles Kurland, Björn Canbäck and Otto Berg.
Genome size versus average protein lengths for the three domains
The graphs contain data from all organisms with fully sequenced genomes from the Cogent database.
Figure S1, Genome size versus average protein length in archaea. The selected proteins are from 365 protein families represented with at least five members in each superkingdom.
Graph below in pdf-format.
 |
Figure S2. Genome size versus average protein length in bacteria. The selected proteins are from 365 protein families represented with at least five members in each superkingdom.
Graph below in pdf-format.
 |
Figure S3. Genome size versus average protein length in eukaryota. The selected proteins are from 365 protein families represented with at least five members in each superkingdom. Please, note log10 scale on x-asis.
Graph below in pdf-format.
 |
Taxonomy and genome size of organisms present in the Cogent database
Table S1. Genome size and average protein length in archaea. Genome sizes and protein lengths are retrieved from the Cogent and Ofam databases. All proteins are included.
Go to top
Archaea table below in tab-delimited format.
| organism | genome size (Mb) | average protein length | taxonomy |
| Methanococcus jannaschii, DSM 2661 | 1.66 |
283 |
Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanocaldococcaceae; Methanocaldococcus |
| Methanobacterium thermoautotrophicum, deltaH | 1.75 |
281 |
Archaea; Euryarchaeota; Methanobacteria; Methanobacteriales; Methanobacteriaceae; Methanothermobacter |
| Archaeoglobus fulgidus, DSM4304 | 2.18 |
275 |
Archaea; Euryarchaeota; Archaeoglobi; Archaeoglobales; Archaeoglobaceae; Archaeoglobus |
| Pyrococcus horikoshii, OT3 | 1.74 |
276 |
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus |
| Aeropyrum pernix, K1 | 1.67 |
237 |
Archaea; Crenarchaeota; Thermoprotei; Desulfurococcales; Desulfurococcaceae; Aeropyrum |
| Thermoplasma volcanium, GSS1 | 1.58 |
297 |
Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma |
| Pyrococcus abyssi, GE5 | 1.76 |
304 |
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus |
| Thermoplasma acidophilum, DSM1728 | 1.56 |
307 |
Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma |
| Halobacterium sp., NRC-1 | 2.01 |
280 |
Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium |
| Sulfolobus solfataricus, P2 | 2.99 |
281 |
Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus |
| Sulfolobus tokodaii, str. 7 | 2.69 |
268 |
Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus |
| Pyrobaculum aerophilum, IM2 | 2.22 |
252 |
Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum |
| Methanopyrus kandleri, AV19 | 1.69 |
297 |
Archaea; Euryarchaeota; Methanopyri; Methanopyrales; Methanopyraceae; Methanopyrus |
| Methanosarcina acetivorans, C2A | 5.71 |
312 |
Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina |
| Methanosarcina mazei, Go1 | 4.10 |
303 |
Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina |
| Nanoarchaeum equitans, Kin4-M | 0.49 |
272 |
Archaea; Nanoarchaeota; Nanoarchaeum. |
| Picrophilus torridus, DSM9790 | 1.55 |
307 |
Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales; Picrophilaceae; Picrophilus. |
| Pyrococcus furiosus, DSM3638 | 1.91 |
282 |
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus. |
| Methanococcus maripaludis, S2 | 1.66 |
285 |
Archaea; Euryarchaeota; Methanococci; Methanococcales; Methanococcaceae; Methanococcus. |
| Haloarcula marismortui, ATCC43049 | 3.41 |
284 |
Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula. |
| Thermococcus kodakaraensis, KOD1 | 2.09 |
277 |
Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus. |
| Sulfolobus acidocaldarius, DSM 639 | 2.23 |
284 |
Archaea; Crenarchaeota; Thermoprotei; Sulfolobales; Sulfolobaceae; Sulfolobus. |
Table S2. Genome size and average protein length in bacteria. Genome sizes and protein lengths are retrieved from the Cogent and Ofam databases. All proteins are included.
Go to top
Bacteria table below in tab-delimited format.
| organism | genome size (Mb) | average protein length | taxonomy |
| Haemophilus influenzae, KW20 | 1.83 |
305 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus |
| Mycoplasma genitalium, G-37 | 0.58 |
365 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma |
| Synechocystis sp., PCC6803 | 3.57 |
326 |
Bacteria; Cyanobacteria; Chroococcales; Synechocystis |
| Mycoplasma pneumoniae, M129 | 0.82 |
348 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma |
| Helicobacter pylori, 26695 | 1.67 |
318 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter |
| Escherichia coli, MG1655 | 4.64 |
318 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia |
| Bacillus subtilis, 168 | 4.21 |
302 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus |
| Borrelia burgdorferi, B31 | 1.23 |
264 |
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Spirochaetaceae; Borrelia; Borrelia burgdorferi group |
| Aquifex aeolicus, VF5 | 1.55 |
315 |
Bacteria; Aquificae; Aquificae (class); Aquificales; Aquificaceae; Aquifex |
| Mycobacterium tuberculosis, H37Rv | 4.41 |
339 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex |
| Treponema pallidum, Nichols | 1.14 |
340 |
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Spirochaetaceae; Treponema |
| Chlamydia trachomatis, serovar D | 1.04 |
349 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydia |
| Rickettsia prowazekii, Madrid E | 1.11 |
335 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; typhus group |
| Helicobacter pylori, J99 | 1.64 |
331 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter |
| Chlamydia pneumoniae, CWL029 | 1.23 |
344 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydophila |
| Thermotoga maritima, MSB8 | 1.86 |
315 |
Bacteria; Thermotogae; Thermotogae (class); Thermotogales; Thermotogaceae; Thermotoga |
| Deinococcus radiodurans, R1 | 3.28 |
309 |
Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus |
| Campylobacter jejuni, NCTC 11168 | 1.64 |
311 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter |
| Neisseria meningitidis, MC58 | 2.27 |
288 |
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria |
| Chlamydia pneumoniae, AR39 | 1.23 |
327 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydophila |
| Chlamydia trachomatis, MoPn | 1.07 |
353 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydia |
| Neisseria meningitidis, Z2491 | 2.18 |
284 |
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria |
| Chlamydia pneumoniae, J138 | 1.23 |
343 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydophila |
| Xylella fastidiosa, 9a5c | 2.68 |
267 |
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella |
| Vibrio cholerae, El Tor N16961 | 4.00 |
304 |
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio |
| Pseudomonas aeruginosa, PAO1 | 6.26 |
334 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group |
| Buchnera sp., APS | 0.64 |
328 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera |
| Ureaplasma urealyticum, serovar 3 | 0.75 |
379 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Ureaplasma |
| Bacillus halodurans, C-125 | 4.20 |
292 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus |
| Mesorhizobium loti, MAFF303099 | 7.60 |
299 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium |
| Escherichia coli O157:H7, EDL933 | 4.10 |
301 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia |
| Mycobacterium leprae, TN | 3.23 |
336 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium |
| Escherichia coli 0157:H7, RIMD0509952 | 5.59 |
301 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia |
| Pasteurella multocida, Pm70 | 2.25 |
332 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Pasteurella |
| Caulobacter crescentus, CB15 | 4.02 |
324 |
Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter |
| Streptococcus pyogenes M1, SF370 | 1.85 |
304 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Staphylococcus aureus MRSA, N315 | 2.81 |
300 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus |
| Staphylococcus aureus VRSA, Mu50 | 2.88 |
294 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus |
| Mycobacterium tuberculosis, CDC1551 | 4.40 |
317 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex |
| Lactococcus lactis, IL1403 | 2.36 |
294 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Lactococcus |
| Mycoplasma pulmonis, UAB CTIP | 0.96 |
371 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma |
| Streptococcus pneumoniae, TIGR4 | 2.20 |
281 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Sinorhizobium meliloti, strain 1021 | 6.68 |
309 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium |
| Clostridium acetobutylicum, ATCC 824 | 4.13 |
310 |
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium |
| Agrobacterium tumefaciens, C58 | 5.66 |
319 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium |
| Rickettsia conorii, str. Malish 7 | 1.27 |
248 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia; spotted fever group |
| Streptococcus pneumoniae, R6 | 2.04 |
288 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Yersinia pestis, CO92 | 4.82 |
315 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia |
| Salmonella enterica serovar Typhimurium, LT2 | 4.95 |
313 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella |
| Listeria monocytogenes, EGD-e | 2.94 |
306 |
Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria |
| Listeria innocua, CLIP 11262 | 3.01 |
300 |
Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria |
| Anabaena sp., strain PCC 7120 | 7.21 |
321 |
Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Anabaena |
| Ralstonia solanacearum | 5.70 |
330 |
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia |
| Brucella melitensis, M16 | 3.29 |
297 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella |
| Clostridium perfringens, str. 13 | 3.03 |
314 |
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium |
| Corynebacterium glutamicum | 3.31 |
312 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium |
| Fusobacterium nucleatum, ATCC 25586 | 2.17 |
311 |
Bacteria; Fusobacteria; Fusobacteria (class); Fusobacterales; Fusobacteriaceae; Fusobacterium |
| Streptococcus pyogenes M18, MGAS8232 | 1.90 |
291 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Streptomyces coelicolor, A3(2) | 8.67 |
328 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces |
| Thermoanaerobacter tengcongensis, MB4 | 2.69 |
301 |
Bacteria; Firmicutes; Clostridia; Thermoanaerobacteriales; Thermoanaerobacteriaceae; Thermoanaerobacter |
| Xanthomonas campestris pv. campestris, ATCC33913 | 5.08 |
343 |
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas |
| Staphylococcus aureus MRSA, MW2 | 2.82 |
297 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus |
| Xanthomonas axonopodis pv. citri, str. 306 | 5.28 |
341 |
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas |
| Buchnera aphidicola, SG | 0.64 |
326 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera |
| Chlorobium tepidum, TLS | 2.15 |
280 |
Bacteria; Bacteroidetes/Chlorobi group; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium |
| Streptococcus pyogenes M3, MGAS315 | 1.90 |
290 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Yersinia pestis, KIM | 4.60 |
308 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia |
| Thermosynechococcus elongatus, BP-1 | 2.59 |
313 |
Bacteria; Cyanobacteria; Chroococcales; Thermosynechococcus |
| Streptococcus agalactiae, 2603 V/R | 2.16 |
291 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Oceanobacillus iheyensis, HET831 | 3.63 |
291 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Oceanobacillus |
| Brucella suis, str. 1330 | 3.31 |
285 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella; Brucella melitensis |
| Shewanella oneidensis, MR1 | 4.97 |
295 |
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Shewanella |
| Bifidobacterium longum, NCC2705 | 2.26 |
371 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium |
| Shigella flexneri (serotype 2a), str. 301 | 4.61 |
292 |
Bacteria; Proteobacteria; gamma subdivision; Enterobacteriaceae; Shigella. |
| Streptococcus mutans, UA159 | 2.03 |
296 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Wigglesworthia glossinidia brevipalpis | 0.70 |
330 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Wigglesworthia |
| Streptococcus agalactiae, NEM316 | 2.21 |
308 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Mycoplasma penetrans, HF2 | 1.36 |
386 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma |
| Escherichia coli, CFT073 | 5.23 |
293 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia |
| Pseudomonas putida, KT2440 | 6.18 |
332 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas putida group |
| Bradyrhizobium japonicum, USDA110 | 9.11 |
317 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium |
| Buchnera aphidicola, Bp | 0.62 |
330 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Buchnera |
| Xylella fastidiosa, PD | 2.52 |
321 |
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella |
| Clostridium tetani, E88 | 2.87 |
335 |
Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium |
| Lactobacillus plantarum, WCFS1 | 3.31 |
306 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus |
| Tropheryma whipplei, TW08/27 | 0.93 |
332 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Micrococcineae; Cellulomonadaceae; Tropheryma |
| Vibrio parahaemolyticus, RIMD2210633 | 5.16 |
309 |
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio |
| Salmonella enterica, Ty2 | 4.79 |
304 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella |
| Bacteroides thetaiotaomicron, VPI-5482 | 6.26 |
390 |
Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroides (class); Bacteroidales; Bacteroidaceae; Bacteroides |
| Enterococcus faecalis ,V583 | 3.21 |
296 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus |
| Chlamydophila caviae, GPIC | 1.18 |
349 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydophila |
| Streptomyces avermitilis | 9.03 |
341 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces |
| Coxiella burnetii, RSA 493 | 2.03 |
278 |
Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Coxiellaceae; Coxiella |
| Leptospira interrogans, str. 56601 | 4.69 |
258 |
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Leptospiraceae; Leptospira |
| Shigella flexneri, 2457T | 4.60 |
291 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella |
| Nitrosomonas europaea, ATCC19718 | 2.81 |
325 |
Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas |
| Bacillus cereus, ATCC 14579 | 5.41 |
277 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group |
| Bacillus anthracis, Ames | 5.23 |
264 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus cereus group |
| Salmonella enterica serovar Typhi, CT18 | 5.10 |
297 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella |
| Mycobacterium bovis, AF2122/97 | 4.36 |
334 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex |
| Streptococcus pyogenes M3, SSI-1 | 1.89 |
287 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus |
| Helicobacter hepaticus, ATCC51449 | 1.80 |
298 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter |
| Pirellula sp., strain 1 | 7.14 |
315 |
Bacteria; Planctomycetes; Planctomycetacia; Planctomycetales; Planctomycetaceae; Pirellula |
| Corynebacterium efficiens, YS314T | 3.14 |
325 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium |
| Blochmannia floridanus | 0.71 |
335 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; ant endosymbionts; Candidatus Blochmannia. |
| Tropheryma whipplei, Twist | 0.93 |
329 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Micrococcineae; Cellulomonadaceae; Tropheryma |
| Bordetella pertussis, NCTC-13251 | 4.09 |
326 |
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella |
| Bordetella bronchiseptica, NCTC-13252 | 5.34 |
326 |
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella |
| Bordetella parapertussis, NCTC-13253 | 4.77 |
328 |
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella |
| Prochlorococcus marinus, SS120 | 1.75 |
275 |
Bacteria; Cyanobacteria; Prochlorophytes; Prochlorococcaceae; Prochlorococcus |
| Prochlorococcus marinus, MIT9313 | 2.40 |
290 |
Bacteria; Cyanobacteria; Prochlorophytes; Prochlorococcaceae; Prochlorococcus |
| Prochlorococcus marinus, MED4 | 1.66 |
283 |
Bacteria; Cyanobacteria; Prochlorophytes; Prochlorococcaceae; Prochlorococcus |
| Synechococcus sp., WH8102 | 2.43 |
290 |
Bacteria; Cyanobacteria; Chroococcales; Synechococcus |
| Mycoplasma gallisepticum, Rlow | 1.00 |
401 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma |
| Pseudomonas syringae pv. tomato, DC3000 | 6.40 |
331 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae group; Pseudomonas syringae group genomosp. 1 |
| Porphyromonas gingivalis, W83 | 2.34 |
337 |
Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroides (class); Bacteroidales; Porphyromonadaceae; Porphyromonas |
| Wolinella succinogenes strain DSM 1740 | 2.11 |
323 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Wolinella |
| Chromobacterium violaceum, ATCC 12472 | 4.75 |
317 |
Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Chromobacterium group; Chromobacterium |
| Photorhabdus luminescens, TTO1 | 5.69 |
327 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Photorhabdus |
| Gloeobacter violaceus, PCC 7421 | 4.66 |
313 |
Bacteria; Cyanobacteria; Chroococcales; Gloeobacter |
| Corynebacterium diphtheriae, NCTC13129 | 2.49 |
320 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium. |
| Vibrio vulnificus, YJ016 | 5.21 |
310 |
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. |
| Geobacter sulfurreducens, PCA | 3.81 |
330 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter. |
| Phytoplasma asteris, OY | 0.86 |
277 |
Bacteria; Firmicutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Phytoplasma; 16SrI (Aster yellows group). |
| Rhodopseudomonas palustris, CGA009 | 5.46 |
328 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas. |
| Bdellovibrio bacteriovorus, HD100 | 3.78 |
326 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Bdellovibrionales; Bdellovibrionaceae; Bdellovibrio. |
| Mycoplasma mycoides subsp. mycoides SC strain PG1 | 1.21 |
324 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma. |
| Lactobacillus johnsonii, NCC 533 | 1.99 |
325 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus. |
| Treponema denticola, ATCC 35405 | 2.84 |
313 |
Bacteria; Spirochaetes; Spirochaetes; Spirochaetales; Spirochaetaceae; Treponema. |
| Bacillus cereus, ATCC 10987 | 5.43 |
264 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus. |
| Wolbachia pipientis, wMeI | 1.27 |
286 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia. |
| Leptospira interrogans, L1-130 | 4.63 |
315 |
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Leptospiraceae; Leptospira. |
| Thermus thermophilus, HB27 | 1.89 |
303 |
Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Thermus. |
| Parachlamydia sp., UWE25 | 2.41 |
325 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Parachlamydiaceae; Parachlamydia. |
| Desulfovibrio vulgaris, str. Hildenborough | 3.57 |
305 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Desulfovibrio. |
| Listeria monocytogenes, F2365 | 2.91 |
303 |
Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria. |
| Listeria monocytogenes, F6854 | 2.95 |
295 |
Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria. |
| Listeria monocytogenes, H7858 | 2.89 |
284 |
Bacteria; Firmicutes; Bacilli; Bacillales; Listeriaceae; Listeria. |
| Bartonella henselae, Houston-1 | 1.93 |
314 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella. |
| Bartonella quintana, Toulouse | 1.58 |
333 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bartonellaceae; Bartonella. |
| Staphylococcus aureus, MSSA476 | 2.80 |
296 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. |
| Staphylococcus aureus, MRSA252 | 2.90 |
297 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. |
| Erwinia carotovora subsp. atroseptica, SCRI1043 | 5.06 |
323 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Pectobacterium. |
| Propionibacterium acnes, KPA171202 | 2.56 |
332 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Propionibacterineae; Propionibacteriaceae; Propionibacterium. |
| Mycoplasma mobile, 163K | 0.78 |
370 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma. |
| Streptococcus pyogenes, MGAS10394 | 1.90 |
292 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus. |
| Leifsonia xyli subsp. xyli, CTCB07 | 2.58 |
297 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Micrococcineae; Microbacteriaceae; Leifsonia. |
| Rickettsia typhi, ATCC VR-144 | 1.11 |
333 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia. |
| Desulfotalea psychrophila, LSv54 | 3.52 |
321 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfobacterales; Desulfobulbaceae; Desulfotalea. |
| Yersinia pseudotuberculosis, IP32953 | 4.74 |
329 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia. |
| Bacillus licheniformis, ATCC 14580 | 4.22 |
290 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus. |
| Burkholderia mallei, ATCC 23344 | 6.00 |
316 |
Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia. |
| Burkholderia pseudomallei, K96243 | 7.24 |
348 |
Bacteria; Proteobacteria; Betapreria; Burkholderiales; Burkholderiaceae; Burkholderia. |
| Mannheimia succiniciproducens, MBEL55E | 2.31 |
290 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Mannheimia. |
| Symbiobacterium thermophilum, IAM 14863 | 3.57 |
310 |
Bacteria; Actinobacteria; Actinobacteria (class); unclassified Actinobacteria; Symbiobacterium. |
| Legionella pneumophila, Philadelphia-1 | 3.40 |
340 |
Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella. |
| Methylococcus capsulatus (Bath) | 4.60 |
332 |
Bacteria; Proteobacteria; Gammaproteobacteria; Methylococcales; Methylococcaceae; Methylococcus. |
| Nocardia farcinica, IFM 10152 | 6.02 |
318 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Nocardiaceae; Nocardia. |
| Bacteroides fragilis, YCH46 | 5.28 |
344 |
Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroides (class); Bacteroidales; Bacteroidaceae; Bacteroides. |
| Acinetobacter calcoaceticus, ADP1 | 3.60 |
316 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter. |
| Mycoplasma hyopneumoniae, strain 232 | 0.89 |
388 |
Bacteria; Firmicutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma. |
| Legionella pneumophila, strain Lens | 3.35 |
336 |
Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella. |
| Yersinia pestis bv Medievalis, 91001 | 4.80 |
314 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia. |
| Legionella pneumophila, strain Paris | 3.50 |
333 |
Bacteria; Proteobacteria; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella. |
| Bacillus licheniformis, DSM13 | 4.22 |
292 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus. |
| Borrelia garinii, PBi | 0.99 |
322 |
Bacteria; Spirochaetes; Spirochaetes (class); Spirochaetales; Spirochaetaceae; Borrelia. |
| Geobacillus kaustophilus, HTA426 | 3.54 |
287 |
Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Geobacillus. |
| Salmonella enterica (Paratyphi A), ATCC 9150 | 4.59 |
307 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella. |
| Zymomonas mobilis (ZM4), ATCC31821 | 2.06 |
295 |
Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas. |
| Streptococcus thermophilus, CNRZ 1066 | 1.80 |
262 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus. |
| Streptococcus thermophilus, LMG18311 | 1.80 |
266 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus. |
| Idiomarina loihiensis, DSM 15497T | 2.84 |
331 |
Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Idiomarinaceae; Idiomarina. |
| Azoarcus sp. EbN1 | 4.73 |
311 |
Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae. |
| Ehrlichia ruminantium (Welgevonden), str. ARC | 1.52 |
352 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Ehrlichia. |
| Campylobacter jejuni, RM1221 | 1.81 |
293 |
Bacteria; Proteobacteria; delta/epsilon subdivisions; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter. |
| Dehalococcoides ethenogenes, 195 | 1.47 |
278 |
Bacteria; Chloroflexi; Dehalococcoidetes; Dehalococcoides. |
| Francisella tularensis, SCHU S4 | 1.89 |
310 |
Bacteria; Proteobacteria; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella. |
| Silicibacter pomeroyi, DSS-3 | 4.12 |
323 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Silicibacter. |
| Anaplasma marginale, St. Maries | 1.20 |
360 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Anaplasmataceae; Anaplasma. |
| Gluconobacter oxydans, 621H | 2.70 |
327 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Gluconobacter. |
| Lactobacillus acidophilus, NCFM (ATCC 700396) | 1.86 |
314 |
Bacteria; Firmicutes; Bacilli; Lactobacillales; Lactobacillaceae; Lactobacillus. |
| Xanthomonas oryzae pv. oryzae, KAXCC10331 | 4.94 |
318 |
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas. |
| Vibrio fischeri, ES114 | 4.28 |
324 |
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio. |
| Bacteroides fragilis, NCTC9343 | 4.27 |
363 |
Bacteria; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidetes (class); Bacteroidales; Bacteroidaceae; Bacteroides. |
| Salmonella enterica sv. Choleraesuis, SC-B67 | 4.67 |
296 |
Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Salmonella. |
| Wolbachia sp., TRS | 1.08 |
299 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Wolbachieae; Wolbachia. |
| Staphylococcus aureus, COL | 2.81 |
295 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. |
| Staphylococcus epidermidis, RP62A | 2.62 |
287 |
Bacteria; Firmicutes; Bacilli; Bacillales; Staphylococcaceae; Staphylococcus. |
| Brucella abortus, 9-941 | 3.29 |
288 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Brucella. |
| Chlamydophila abortus, S26/3 | 1.14 |
358 |
Bacteria; Chlamydiae/Verrucomicrobia group; Chlamydiae; Chlamydiae (class); Chlamydiales; Chlamydiaceae; Chlamydophila. |
| Xanthomonas campestris pv. campestris, 8004 | 5.15 |
340 |
Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas. |
| Photobacterium profundum, SS9 | 6.40 |
316 |
Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium. |
| Rickettsia felis, URRWXCal2 | 1.49 |
292 |
Bacteria; Proteobacteria; Alphaproteobacteria; Rickettsiales; Rickettsiaceae; Rickettsieae; Rickettsia. |
| Pseudomonas fluorescens, Pf-5 | 7.07 |
340 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. |
| Corynebacterium jeikeium, K411 | 2.14 |
343 |
Bacteria; Actinobacteria; Actinobacteria (class); Actinobacteridae; Actinomycetales; Corynebacterineae; Corynebacteriaceae; Corynebacterium. |
| Haemophilus influenzae strain, 86-028NP | 1.91 |
308 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pasteurellales; Pasteurellaceae; Haemophilus. |
| Pseudomonas syringae pv. syringae, B728a | 6.10 |
349 |
Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas. |
Table S3. Genome size and average protein length in eukaryota. Genome sizes and protein lengths are retrieved from the Cogent and Ofam databases. All proteins are included.
Go to top
Eukaryota table below in tab-delimited format.
| organism | genome size (Mb) |
average protein length |
taxonomy |
| Saccharomyces cerevisiae, S288C | 12.07 |
471 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces |
| Caenorhabditis elegans | 97.00 |
439 |
Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Pseudocoelomata; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis |
| Arabidopsis thaliana | 115.43 |
436 |
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta;eudicotyledons; core eudicots; rosids; eurosids II; Brassicales; Brassicaceae; Arabidopsis. |
| Schizosaccharomyces pombe | 13.80 |
476 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces |
| Encephalitozoon cuniculi | 2.56 |
359 |
Eukaryota; Fungi/Metazoa group; Fungi; Microsporidia; Apansporoblastina; Unikaryonidae; Encephalitozoon |
| Plasmodium falciparum, 3D7 | 22.85 |
759 |
Eukaryota; Alveolata; Apicomplexa; Haemosporida; Plasmodium |
| Anopheles gambiae, PEST | 278.24 |
433 |
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Nematocera; Culicoidea; Anopheles. |
| Neurospora crassa | 38.64 |
480 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora |
| Drosophila melanogaster | 137.50 |
547 |
Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila. |
| Mus musculus | 2500.00 |
457 |
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Rodentia; Sciurognathi; Muridae; Murinae; Mus. |
| Caenorhabditis briggsae | 104.00 |
411 |
Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis. |
| Ashbya gossypii | 9.00 |
490 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium. |
| Cyanidioschyzon merolae, 10D | 16.52 |
517 |
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon. |
| Cryptosporidium parvum, typeII | 9.10 |
614 |
Eukaryota; Alveolata; Apicomplexa; Coccidia; Eimeriida; Cryptosporidiidae; Cryptosporidium. |
| Yarrowia lipolytica, CLIB99 | 20.42 |
479 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Dipodascaceae; Yarrowia. |
| Kluyveromyces lactis, CLIB210 | 10.61 |
469 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Kluyveromyces. |
| Debaryomyces hansenii CBS767 | 12.15 |
445 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Debaryomyces. |
| Candida glabrata, CBS138 | 12.18 |
502 |
Eukaryota; Fungi/Metazoa group; Fungi; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; mitosporic Saccharomycetales; Candida. |
| Thalassiosira pseudonana, CCMP 1335 | 25.00 |
261 |
Eukaryota; stramenopiles; Bacillariophyta; Coscinodiscophyceae; Thalassiosirophycidae; Thalassiosirales; Thalassiosiraceae; Thalassiosira. |
| Cryptosporidium hominis, TU502 | 9.16 |
450 |
Eukaryota; Alveolata; Apicomplexa; Coccidia; Eimeriida; Cryptosporidiidae; Cryptosporidium. |
| Cryptococcus neoformans, JEC 21 | 21.00 |
535 |
Eukaryota; Fungi/Metazoa group; Fungi; Basidiomycota; Hymenomycetes; Heterobasidiomycetes; Tremellomycetidae; Tremellales; Tremellaceae; Filobasidiella. |
| Trypanosoma brucei, TREU927/4 GUTat10.1 | 26.00 |
499 |
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon. |
| Trypanosoma cruzi, CL Brener TC3 | 34.00 |
497 |
Eukaryota; Euglenozoa; Kinetoplastida; Trypanosomatidae; Trypanosoma; Schizotrypanum. |
| Homo sapiens, v35.35h. NOTE! Not included in the analysis due to inconsistency in OFAM and Cogent databases. | 3272.00 |
498 |
Eukaryota; Fungi/Metazoa group; Metazoa; Eumetazoa; Bilateria; Coelomata; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Euarchontoglires; Primates; Si |
Taxonomy of organisms used in analyses of FSFs
- Archaea table, Table S4
- Bacteria table, Table S5 (Courtesy of Song Yang)
- Eukaryota table, Table S6 (Courtesy of Song Yang)
Table S4. Taxonomy of archaeal organisms used in analysis of FSFs Go to top
Archaea table below in tab-delimited format. Data from Yang,S., Doolittle,R.F. & Bourne,P.E. (2005) Phylogeny determined by protein domain content. Proc.Natl.Acad.Sci. USA 102;373-378.
| Abbrevation | Organism |
|---|---|
| Aful | Archaeoglobus fulgidus DSM 4304 |
| Aper | Aeropyrum pernix |
| Halsp | Halobacterium sp. NRC-1 |
| Mace | Methanosarcina acetivorans C2A |
| Mjan | Methanocaldococcus jannaschii |
| Mkan | Methanopyrus kandleri AV19 |
| Mmar | Methanococcus maripaludis |
| Mmaz | Methanosarcina mazei Goe1 |
| Mthe | Methanothermobacter thermautotrophicus Delta H |
| Nequ | Nanoarchaeum equitans Kin4-M |
| Paby | Pyrococcus abyssi |
| Pfur | Pyrococcus furiosus DSM 3638 |
| Phor | Pyrococcus horikoshii |
| Ptor | Picrophilus torridus DSM 9790 |
| PYaer | Pyrobaculum aerophilum IM2 |
| Ssol | Sulfolobus solfataricus |
| Stok | Sulfolobus tokodaii |
| Taci | Thermoplasma acidophilum |
| Tvol | Thermoplasma volcanium |
Table S5. Taxonomy of bacterial organisms used in analysis of FSFs. (Courtesy of Song Yang). Go to top
Bacteria table below in tab-delimited format.
| Blon | Bifidobacterium longum NCC2705 |
| Aaeo | Aquifex aeolicus VF5 |
| Bthe | Bacteroides thetaiotaomicron VPI-5482 |
| Ccav | Chlamydophila caviae GPIC |
| Gvio | Gloeobacter violaceus |
| Drad | Deinococcus radiodurans R1 |
| Bant | Bacillus anthracis Ames |
| Cace | Clostridium acetobutylicum |
| Efae | Enterococcus faecalis V583 |
| Mgal | Mycoplasma gallisepticum R |
| Fnuc | Fusobacterium nucleatum ssp. nucleatum ATCC 25586 |
| Pirsp | Pirellula sp. 1 |
| Atum | Agrobacterium tumefaciens C58 |
| Bbro | Bordetella bronchiseptica RB50 |
| Bbac | Bdellovibrio bacteriovorus HD100 |
| Cjej | Campylobacter jejuni ssp. jejuni NCTC 11168 |
| Acisp | Acinetobacter sp. ADP1 |
| Bbur | Borrelia burgdorferi B31 |
| Tmar | Thermotoga maritima |
Table S6. Taxonomy of eukaryotic organisms used in analysis of FSFs. (Courtesy of Song Yang). Go to top
Eukaryota table below in tab-delimited format.
| Pfal | Plasmodium falciparum 1 |
| Agos | Ashbya gossypii 1.0 |
| Cgla | Candida glabrata |
| Klac | Kluyveromyces lactis |
| Ncra | Neurospora crassa 3 |
| Spom | Schizosaccharomyces pombe |
| Umay | Ustilago maydis 1 r2 |
| Ecun | Encephalitozoon cuniculi |
| Agam | Anopheles gambiae 22.2b |
| Cint | Ciona intestinalis 1.0 |
| Drer | Danio rerio 22.3b |
| Ggal | Gallus gallus 22.1 |
| Hsap | Homo sapiens 22.34d |
| Mmus | Mus musculus 22.32b |
| Xtro | Xenopus tropicalis 2.0 |
| Cbri | Caenorhabditis briggsae Aug03 |
| Ddis | Dictyostelium discoideum 2 |
| Atha | Arabidopsis thaliana 5 |
| Osat | Oryza sativa ssp. japonica 2.0 |